Research & Papers

LLaMA 3.1 extracts brain MRI data with 96% accuracy from Dutch reports

Open-weight LLM matches radiologists on atrophy scores, cuts data extraction time dramatically.

Deep Dive

A team from Erasmus MC and collaborating institutions evaluated LLaMA 3.1's ability to extract structured information from Dutch neuroradiology reports. They used 947 brain MRI reports from a tertiary memory clinic (2016–2021), annotated by trained medical students across 30 variables—including visual rating scores, numerical counts, and free-text lesion locations. The study tested both zero-shot and few-shot prompting strategies, with and without English translation of the Dutch reports.

Results showed that LLaMA 3.1 achieved high zero-shot performance for visual rating scores: Medial Temporal Atrophy left 90%, right 96%; Global Cortical Atrophy 87%; and Fazekas scale 94%. Accuracy for detecting microbleed mentions was 93% and infarct mentions 82%. Numerical variables were more challenging: microbleed count accuracy was 80%, infarct count 66%. However, few-shot prompting using structural similarity-based example selection boosted microbleed count to 92% and infarct count to 81%. Free-text lesion location similarity reached 0.95. English translation yielded comparable results, suggesting the model understands medical context beyond language. The findings demonstrate that open-weight LLMs like LLaMA 3.1 can automate data extraction from radiology reports, enabling large-scale clinical research while preserving patient privacy.

Key Points
  • LLaMA 3.1 achieved 96% accuracy for right medial temporal atrophy rating (zero-shot) on 947 Dutch MRI reports
  • Few-shot prompting improved microbleed count accuracy from 80% to 92% using structural similarity-based example selection
  • English translation of reports gave comparable results, indicating robust medical understanding across languages

Why It Matters

Automates extraction of structured clinical data from free-text radiology reports, unlocking large-scale neuroimaging research without manual annotation.

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